Table 1 Primer sequences of the microsatellite markers used for differentiating recrudescences from reinfections in paired samples from enrolled patients with treatment failure after day 7.
Micro satellite markers | Motif | External PCR | Internal PCR | Label |
|---|---|---|---|---|
14.185§ | AT | F: TGCAGATATGCTGTCGAAT | F: GCAGTTGTTGCAGATTGAGC | 6FAM |
R: GGGAAAAACTTGGTCACAC | R: TAAGGCGTGCACGTTATCAT | |||
8.332§ | AT | F: TGAAGCAATATAGCGATGAC | F: CCTCGATGGTGATGTGATGA | HEX |
R: CGGTGTAGTGTGGTACAATG | R: GTATAACATGGCACCCGACCT | |||
6.34§ | AC | F: CCCAATTAAGTGCAAATCA | F: TGAGCGCTTTAAGCTTCTGC | 6FAM |
R: CATGTAAAGAGGCACATGG | R: CAAAAATGAATCGTGGCACA | |||
2.21§ | AC | F: GGCAGGAACGTAGAGGAG | F: CCATCTGCTCAAATCCGAAG | 6FAM |
R: GGCTTGTTCATTTTGAGGTA | R: GGCTCCTCCCTGTCTCTGTAG | |||
AY391734# | CA | F: TACCCCAGCCTTATCTCTC | F: TTTTCCCTTCGGAAAAACG | 6FAM |
R: AAATGCACAGACACTACGC | R: ACGACCATCACCTGCCATAG | |||
AY391740# | AC | F: ATTTGTGTATGCCTTGTGTT | F: GTTTACCAGGCCCAATTCAC | HEX |
R: GTGAGGGTGTCTATCCGTA | R: GTTCACACGGGCGTATACAT |