UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies

Malaria Journal

Table 1 Statistics of sequence reads mapped to chromosomes

Sample name	No. reads (NSM_1)	% reads (NSM_1)	No. reads (NSM_2)	% reads (NSM_2)
Total reads	2,808,0144		2,825,3076
Total mapped	1,863,0250	66.3	1,862,9614	65.9
Multiple mapped	28,1316	1.0	26,3365	0.9
Uniquely mapped	1,809,6655	64.4	1,812,8822	64.2
Read-1	890,8816	31.7	891,7725	31.6
Read-2	918,7839	32.7	921,1097	32.6
Reads map to ‘ + ’	904,9370	32.2	906,2606	32.1
Reads map to ‘-’	904,7285	32.2	906,6216	32.1
Non-splice reads	1,611,0463	57.4	1,604,6313	56.8
Splice reads	198,6192	7.1	208,2509	7.4

Multiple mapped, number of reads mapped to multiple sites; uniquely mapped, number of reads mapped to one site only; Read-1 and Read-2, reads from the two separate lanes; Reads mapped to ‘+’ or ‘−’, mapped to ‘+’ or ‘−’ strands of DNA; Splice reads, number of reads mapped to splice sites

ISSN: 1475-2875