SNP 1

SNP 2

MHF

REM

Bayesian

EM

MCMC


1

1

0.928 (0.892–0.955)

0.914 (0.858–0.970)

0.936 (0.907–0.960)

0.908 (0.821–0.961)

0.914 (0.828–0.965)

1

2

0.011 (0.002–0.030)

0.016 (0.000–0.041)

0.017 (0.006–0.037)

0.013 (0.000–0.070)

0.021 (0.002–0.083)

2

1

0.004 (0.000–0.017)

0.005 (0.000–0.018)

0.007 (0.001–0.017)

0.009 (0.000–0.064)

0.008 (0.000–0.061)

2

2

0.057 (0.033–0.089)

0.065 (0.008–0.121)

0.038 (0.017–0.064)

0.069 (0.024–0.150)

0.058 (0.017–0.135)


SNP
1 = wildtype alone, 2 = mutant alone, MHF MalHaploFreq, REM malaria.em, Bayesian Bayesian statistic, EM EM algorithm, MCMC Markov chain Monte Carlo