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Table 3 Assembly and mapping metrics for anopheline genomes

From: Comparative physical genome mapping of malaria vectors Anopheles sinensis and Anopheles gambiae

Species Genome assembly Total scaffolds Mapped scaffolds Scaffold N50, bp Total length, Mb Mapped length, Mb Mapped, %
An. albimanus AalbS1 204 40 18,068,499 170.5 167.4 98.2
An. gambiae AgamP4 8 5 49,364,325 264 273.1 84.3
An. stephensi AsteI2 23,371 86 1,591,355 221.3 137.14 62
An. stephensi AsteS1 1100 101 837,295 225 92.83 41
An. atroparvus AatrE1 1371 7 9,206,694 224.3 88.8 39.6
An. sinensis AsinC2 9592 52 814,231 220.8 79.3 35.9
An. funestus AfunF1 1392 103 671,960 225.2 79.0 35.1
  1. Data for An. sinensis are from this study. Data for An. albimanus and An. stephensi AsteI2 are from Ref. [26] and Ref. [23], respectively. Data for An. gambiae are from Ref. [25] and https://www.vectorbase.org/organisms/anopheles-gambiae/pest/agamp4. Data for other species are from Ref. [12]