|
Haplotype cluster
|
Molecular barcodes
|
N (%)
|
N (isolats)
|
PfRh2bdel (%)
|
PfRh2bfull (%)
|
|---|
|
Haplotype cluster 36
|
CACTGCAGACCGCACCCAAGCCTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 38
|
CACTCGAGATCGTCACCACGCTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 45
|
TATTCCGGTCCGTCCCCTCGCTTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 51
|
TACTCCGGTTCGCACACACGACTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 49
|
TATTCGAAATCGCACCCTAGATTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 48
|
TACTCCAGTCCATACACACGATTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 46
|
TACTGCAGATTGTACCCAAAACTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 57
|
CACTGCGGATTGTACCTAAGACTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 54
|
CGCTCCAGACTACACCCTAAACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 53
|
TACTCCGGATTGTCACCAAGACTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 59
|
TACTCCGGTTTATACCTTAGACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 61
|
TACCGGAGTCCGTACCTAAGCCTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 15
|
TACTCCGGTTCGTAAACTCGCCTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 63
|
TACTCCAGACCGCCCCTAAAATTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 9
|
TATTCCAGATXGCAACTTCGACTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 62
|
TACTCGAGACTGCNCATACACTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 13
|
TACTCGAAACTXCCCATAAGCTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 68
|
TACCCCGGACCACCAATAAGACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 69
|
TACTGGGATCCGCACCTAAGACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 67
|
CACTCCGGATTGCCACTTAGATTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 70
|
TATTCCGGACXACACACTAGCTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 22
|
TACTCCGGATCGCACCCTAGATTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 74
|
TACTCCAGACTATCCATTCGATTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 71
|
CACTCGGGATTXCCACTAAGCTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 80
|
CATTCCAGTCCXCCAATAAGATTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 72
|
TATTGGGGATCGCAACCAAGATTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 77
|
TACTGGAGTCCGTACCTTAGCTTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 97
|
CACTCGAAATXATACCTTAGCTTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 87
|
TACTCGGGTCTATAAATAAGACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 89
|
TACTCGAGTTTATACCTTAGACTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 92
|
TATTGCAGTCCXCAAATAAGCTTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 84
|
CACTCCAGTCCACCACNTAGATTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 96
|
TATTCCAGACCGCACATTAGCCTG
|
0.345
|
2
|
50
|
50
|
|
Haplotype cluster 93
|
TACTCCAGTCCGTCACTTAGACTG
|
0.345
|
2
|
100
|
0
|
|
Haplotype cluster 44
|
TACTCCAGACTACAACTACGCCTG
|
0.345
|
2
|
0
|
100
|
|
Haplotype cluster 43
|
TATTCCAGATTGCAACTTCGCCTG
|
0.517
|
3
|
100
|
0
|
|
Haplotype cluster 58
|
CACTCGAGTTXACAACCTAGCCTG
|
0.517
|
3
|
33
|
67
|
|
Haplotype cluster 7
|
CACTCCGGATTGCCACTAAGATTG
|
0.517
|
3
|
33
|
67
|
|
Haplotype cluster 19
|
TATTCGAGTCTACACCTTCACTTG
|
0.517
|
3
|
100
|
0
|
|
Haplotype cluster 21
|
TACCCCGGTCCACCACTAAAATTG
|
0.517
|
3
|
0
|
100
|
|
Haplotype cluster 23
|
CACCCGAGTCCACCAACAAGACTG
|
0.517
|
3
|
0
|
100
|
|
Haplotype cluster 95
|
CACCCCGAATCXCACCTAAGACTG
|
0.517
|
3
|
0
|
100
|
|
Haplotype cluster 99
|
TACTCCGAACTGCACATTAGATTG
|
0.517
|
3
|
100
|
0
|
|
Haplotype cluster 55
|
TACTCCGGTTTGCACACACGACTG
|
0.69
|
4
|
100
|
0
|
|
Haplotype cluster 64
|
TACTCGAGATXATACATACACTTG
|
0.69
|
4
|
0
|
100
|
|
Haplotype cluster 10
|
CATTGCGATCTGCAACCTAAACTG
|
0.69
|
4
|
100
|
0
|
|
Haplotype cluster 24
|
CATTCCAGTCCXCCCATTAGATTG
|
0.69
|
4
|
25
|
75
|
|
Haplotype cluster 81
|
TACTCCAGATCGCACCCAAGCCTG
|
0.69
|
4
|
75
|
25
|
|
Haplotype cluster 98
|
CACTCGAGTTTACAACTAAGATTG
|
0.69
|
4
|
25
|
75
|
|
Haplotype cluster 5
|
TACTCGAAACTGCCCATAAGCTTG
|
0.69
|
4
|
0
|
100
|
|
Haplotype cluster 65
|
CACTCCAAATCGTACCTTAGATTG
|
0.862
|
5
|
100
|
0
|
|
Haplotype cluster 8
|
TACCCCGGTCCACACCTTAACTTG
|
0.862
|
5
|
100
|
0
|
|
Haplotype cluster 11
|
TACTCGAGATCATACATACACTTG
|
0.862
|
5
|
0
|
100
|
|
Haplotype cluster 12
|
CACTGCGATCTGCAACCTAAACTG
|
0.862
|
5
|
100
|
0
|
|
Haplotype cluster 6
|
CATTCCAGTCCGCCAATAAGATTG
|
1.034
|
6
|
0
|
100
|
|
Haplotype cluster 26
|
CACTCCAGTCCGTCACCAAGATTG
|
1.034
|
6
|
17
|
83
|
|
Haplotype cluster 17
|
TACCCCGGTCCACCAATAAGATTG
|
1.207
|
7
|
0
|
100
|
|
Haplotype cluster 16
|
TACTCCAGATTACAACCTAGCCTG
|
1.207
|
7
|
100
|
0
|
|
Haplotype cluster 66
|
TGTTCCAGTTTATCACCACGCCTG
|
1.379
|
8
|
12.50
|
87.50
|
|
Haplotype cluster 18
|
TATTCCAGTCCACCCATAAGACTG
|
1.552
|
9
|
89
|
11
|
|
Haplotype cluster 4
|
TACTCCGGTTXGCACACACGACTG
|
2.586
|
15
|
100
|
0
|
|
Haplotype cluster 29
|
TACCCCGGTCCACCAATAAGACTG
|
7.241
|
42
|
9.50
|
90.50
|
| |
UNIQUES
|
58.27
|
338
|
49.11
|
50.89
|
- N, number of isolates; PfRh2bdel, deletion present; PfRh2bfull, full-length sequence
