Table 1 Genome wide transcriptome data from studies integrated in PlasmoDB release43; http://www.plasmodb.org (np: not published)

RNA-seq

P. berghei ANKA

5 asexual and sexual stage transcriptomes

[49]

Female and male gametocyte

[85]

P. chabaudi chabaudi

Trophozoite transcriptomes after mosquito transmission or direct injection into mice

[86]

P. yoelii yoelii 17X

Salivary gland sporozoite transcriptomes: WT vs. Puf2-KO

[87]

P. falciparum 3D7

NSR-seq transcript profiling of malaria-infected pregnant women and children

[88]

Polysomal and steady-P. berghei state asexual stage transcriptomes

[89]

Blood stage transcriptome (3D7)

[90]

Transcriptomes of 7 sexual and asexual life stages

[91]

Intraerythrocytic cycle transcriptome (3D7)

np

Strand specific transcriptomes of 4 life cycle stages

[91]

Transcriptome during intraerythrocytic development

[92]

Strand specific transcriptome of the intraerythrocytic developmental cycle

[93]

Ribosome and steady state mRNA sequencing of asexual cell cycle stages

[94]

Mosquito or cultured sporozoites and blood stage transcriptome (NF54)

np

Female and male gametocyte transcriptomes

[50]

Ring, oocyst and sporozoite transcriptomes

[95]

P. vivax P01

Hypnozoite RNAseq

[29]

Transcription profile of intraerythrocytic cycle

[96]

P. cynomolgi strain M

P. cynomolgi transcriptome of whole blood and bone marrow collected during 100-day infection of M. mulatta

[97]

Hypnozoite, schizont and blood stage transcriptomes (laser microdissection)

[98]

Liver stage hypnozoite vs schizont transcriptomes (primary culture)

[30]

DNA micro-array

P. berghei ANKA

DOZI mutant transcript profile

[51]

Transcript profiling of developmental stages—high producer (HP/HPE)

[99]

AP2-G2 knock out and WT expression profiles

[100]

P. yoelii yoelii 17X

Liver, mosquito and blood stage expression profiles

[28]

Life cycle stages

[101]

P. falciparum 3D7

Pfal3D7 real-time transcription and decay

np

Invasion pathway knockouts

[102]

Three isogenic lines w/CQ treatment: expression profiles

[103]

Life cycle expression data (3D7)

[104]

Sexually vs asexually committed schizont transcriptional profiles

[105]

Gametocyte stages I-V transcriptomes

[106]

Two Sir2 KO lines expression profiling

[107]

Asexual blood stage transcriptomes of clonal strains

[108]

Erythrocytic expression time series (3D7, DD2, HB3)

[109, 110]

Microarray expression from patient samples

[111]

mRNA half life

[112]

P. vivax P01

Intraerythrocytic developmental cycle of three isolates

[113]

Sporozoite expression profiles

[114]

P. knowlesi strain H

Intraerythrocytic cycle expression profile: in vitro and ex vivo (Pkno PK1(A+))

[115]