Arboviruses
|
Flaviviridae
|
1
|
Dengue virus (DENV) [8, 42, 61, 62]
|
C-prm D1
|
TCAATATGCTGAAACGCGAGAGAAACCG
|
5.5
|
[25]b,c
|
D2
|
TTGCACCAACAGTCAATGTCTTCAGGTTC
|
5.5
|
DENV-1d
|
rTS1 (DEN-1)
|
CCCGTAACACTTTGATCGCT
|
5.5
|
DENV-2d
|
mTS2 (DEN-2)
|
CGCCACAAGGGCCATGAACAGTTT
|
5.5
|
DENV-3d
|
TS3 (DEN-3)
|
TAACATCATCATGAGACAGAGC
|
5.5
|
DENV-4d
|
rTS4 (DEN-4)
|
TTCTCCCGTTCAGGATGTTC
|
5.5
|
2
|
West Nile virus (WNV) [63,64,65]
|
WNV lancio F
|
CAGACCACGCTACGGCG
|
5.5
|
[66]b
|
WNV lancio R
|
CTAGGGCCGCGTGGG
|
5.5
|
WNV lancio P
|
TCTGCGGAGAGTGCAGTCTGCGAT
|
10
|
3
|
Zika virus (ZIKV) [67, 68]
|
ZVforw
|
CAGCTGGCATCATGAAGAAYC
|
5.5
|
[70]b
|
ZVrev1
|
CACTTGTCCCATCTTCTTCTCC
|
5.5
|
ZVrev2
|
CACCTGTCCCATCTTTTTCTCC
|
5.5
|
ZVprobe
|
CYGTTGTGGATGGAATAGTGG
|
10
|
4
|
Yellow Fever virus (YFV) [69,70,71]
|
YFV-F
|
GCACGGATGTAACAGACTGAAGA
|
5.5
|
[72]b
|
YFV-R
|
CCAGGCCGAACCTGTCAT
|
5.5
|
YFV-probe
|
CGACTGTGTGGTCCGGCCCTC
|
10
|
Togaviridae (Alphaviruses) [37]
|
5
|
Semliki Forest virus (SFV) [64]
|
SFV-F
|
ACAGACTGTCACTGAGCAG
|
5.5
|
[75]b
|
SFV-R
|
AGCTCCACGTCATCATTGAG
|
5.5
|
SFV-probe
|
GTGACCATCTACTGCAGAGA
|
10
|
6
|
O´nyong-nyong virus (ONNV) [74,75,76]
|
ONNV-F
|
GCAGGGAGGCCAGGACAGT
|
5.5
|
[79]b
|
ONNV-R
|
GCCCCTTTTTCYTTGAGCCAGTA
|
5.5
|
ONNV-probe
|
TGTATTGCTCCTGCCGCTGG
|
10
|
7
|
Chikungunya virus (CHIKV) [42, 76, 78, 79]
|
ChikS
|
TGATCCCGACTCAACCATCCT
|
5.5
|
[82]b
|
ChikAs
|
GGCAAACGCAGTGGTACTTCCT
|
5.5
|
ChikP
|
TCCGACATCATCCTCCTTGCTGGC
|
10
|
Bunyaviridae
|
8
|
Rift Valley fever virus (RVFV) [81, 82]
|
RVF-F
|
TGAAAATTCCTGAGACACATGG
|
5.5
|
[79]b
|
RVF-R
|
ACTTCCTTGCATCATCTGATG
|
5.5
|
RVF-probe
|
CACAAGTCCACACAGGCCCCTTACAT
|
10
|
Protozoa
|
Malaria (Plasmodium sp.)
|
9
|
Plasmodium sp. (MAL) [83]
|
Plasmo Plu3 F
|
GCTCTTTCTTGATTTCTTGGATG
|
5.5
|
[26]b
|
Plasmo Plu3 R
|
AGCAGGTTAAGATCTCGTTCG
|
5.5
|
Plasmo Plu3 P
|
ATGGCCGTTTTTAGTTCGTG
|
10
|
P. falciparum [84]
|
FAL-F
|
CTTTTGAGAGGTTTTGTTACTTTGAGTAA
|
5.5
|
[51]e
|
FAL-R
|
TATTCCATGCTGTAGTATTCAAACACAA
|
5.5
|
FAL-probe
|
TGTTCATAACAGACGGGTAGTCATGATTGAGTTCA
|
10
|
P. vivax [85]
|
VIV-F
|
ACGCTTCTAGCTTAATCCACATAACT
|
5.5
|
[88]e
|
VIV-R
|
ATTTACTCAAAGTAACAAGGACTTCCAAGC
|
5.5
|
VIVAX-probe
|
TTCGTATCGACTTTGTGCGCATTTTGC
|
10
|
P. malariae [87, 88]
|
Pm-1
|
AGTTAAGGGAGTGAAGACGATCAGA
|
5.5
|
[89]e
|
Pm-2
|
CAACCCAAAGACTTTGATTTCTCATAA
|
5.5
|
Pm-probe
|
ATGAGTGTTTCTTTTAGATAGC
|
10
|