Skip to main content

Table 3 Host species and sampling location of infections of Plasmodium relictum cyt b lineages SGS1 and GRW11 used for sequencing the full msp1 gene

From: Low MSP-1 haplotype diversity in the West Palearctic population of the avian malaria parasite Plasmodium relictum

Host species Lineage Haplotype Sample location % coverage less than 5x Gaps in MSP1 block 14
Coccothraustes coccothraustes GRW11 Pr2 Lithuania 4 (187) 0
Passer domesticus GRW11 Pr2 Lithuania 0 0
Passer domesticus GRW11 Pr2 Lithuania 0 0
Passer domesticus SGS1 Pr2 Bulgaria 11.2 (530) 0
Passer domesticus SGS1 Pr2 Bulgaria 43.4 (2056) 89/269 (32.5%)
Passer domesticus SGS1 Pr2 Bulgaria 32.5 (1536) 14/269 (5.2%)
Passer domesticus SGS1 Pr2 Lithuania 0 0
Passer domesticus SGS1 Pr2 Lithuania 0 0
Passer domesticus SGS1 Pr2 Lithuania 0.2 (8) 0
Coccothraustes coccothraustes SGS1 Pr2 Lithuania 0 0
Loxia curvirostra SGS1 Pr2 Lithuania 1.1 (50) 0
  1. % coverage refers to the percentage of nucleotides, out of the total of  4737 bp (excluding the stop codon), that had a sequence coverage less than 5; in parenthesis the actual number of nucleotide positions are presented. Gaps in msp1 block 14 refers to the number of nucleotide positions, out of the total, at this section of the gene, that had missing data (in parenthesis the % is presented)