Table 5 Frequency of heterotic models selected and the SNPs showing discordant results between the MAX4 and allelic genome-wide Gambian malaria dataset
From: Genome-wide association testing in malaria studies in the presence of overdominance
Chr | SNPs | Heterosis | Cut-off | No. Discordant | No. Discordant/1000 |
|---|---|---|---|---|---|
X | 370 | 207 | 0.0001351 | 0 | 0 |
Y | 256 | 161 | 0.0001953 | 0 | 0 |
01 | 876 | 667 | 0.0000571 | 2 | 3 |
02 | 615 | 473 | 0.0000813 | 0 | 0 |
03 | 547 | 419 | 0.0000914 | 1 | 2 |
04 | 417 | 298 | 0.0001199 | 1 | 3 |
05 | 506 | 399 | 0.0000988 | 2 | 5 |
06 | 1040 | 846 | 0.0000481 | 0 | 0 |
07 | 497 | 391 | 0.0001006 | 3 | 8 |
08 | 467 | 342 | 0.0001071 | 0 | 0 |
09 | 420 | 322 | 0.0001190 | 1 | 3 |
10 | 495 | 379 | 0.0001010 | 3 | 8 |
11 | 553 | 423 | 0.0000904 | 1 | 2 |
12 | 547 | 416 | 0.0000914 | 0 | 0 |
13 | 298 | 233 | 0.0001678 | 0 | 0 |
14 | 250 | 195 | 0.0002000 | 2 | 10 |
15 | 271 | 200 | 0.0001845 | 0 | 0 |
16 | 292 | 223 | 0.0001712 | 0 | 0 |
17 | 289 | 213 | 0.0001730 | 0 | 0 |
18 | 192 | 148 | 0.0002604 | 0 | 0 |
19 | 196 | 136 | 0.0002551 | 1 | 7 |
20 | 251 | 161 | 0.0001992 | 0 | 0 |
21 | 103 | 74 | 0.0004854 | 0 | 0 |
22 | 155 | 109 | 0.0003226 | 0 | 0 |