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Fig. 2 | Malaria Journal

Fig. 2

From: An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis

Fig. 2

Correlation analysis between sequencing quality parameters and variant calling performance, sensitivity (A) and precision (B). Red (75 bp) and green (100 bp) represent samples with old shorter Illumina reads. Samples with current longer Illumina reads are coloured blue. Read score in the x-axis represents values for either insert size, read coverage, read length or read quality. Pearson correlation was used

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