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Two cases of long-lasting, sub-microscopic Plasmodium malariae infections in adults from coastal Tanzania



Malaria is endemic in Tanzania with majority of clinical cases caused by Plasmodium falciparum. Additionally, Plasmodium malariae and Plasmodium ovale spp. are also present and clinical manifestations caused by these infections are not well described. Clinical episodes caused by P. malariae infections are often characterized by a relatively mild illness with a low number of parasites, which can persist for long periods. In this report, two cases of P. malariae infections that were identified during a clinical trial evaluating the P. falciparum malaria vaccine candidate, PfSPZ Vaccine are described. The two participants were followed up and monitored for clinical and laboratory parameters to assess vaccine safety providing the opportunity to study clinical manifestations of P. malariae over 4 months.

Case presentation

Two young, healthy Tanzanian men infected with low density asexual blood stage P. malariae diagnosed by quantitative polymerase chain reaction (qPCR) are described. Retrospective analysis of collected and stored blood samples revealed that the two volunteers had constant asexual blood stage parasitaemia for more than 4 months. During the 132 days of infection, the volunteers’ vital signs, body temperature and serum biochemistry all remained within normal ranges. Haematological abnormalities, which were transiently outside normal ranges, were regarded as not clinically significant. During this time period, four consecutive evaluations of blood samples by thick blood smear microscopy conducted by an experienced microscopist were all negative, indicating the presence of low-density sub-microscopic infections.


The two cases of P. malariae infections presented here confirm the ability of this Plasmodium species to persist at low density in the human host for extended time periods without causing clinical symptoms. The presented data also demonstrate that clinical study sites in malaria endemic regions need to have a strong malaria diagnostic infrastructure, including the ability of capturing sub-microscopic parasitaemia and differentiation of Plasmodium species.

Trial registration NCT02613520,, Registered: November 24th 2015, Enrolment of the first participant to the trial: December 15th 2015, Trial was registered before the first participant was enrolled


Malaria is endemic in Tanzania with more than 90% of the population at risk and 5.6 million cases reported by the public health sector in 2017 [1]. While Plasmodium falciparum is the dominant malaria species responsible for majority of infections and deaths, other Plasmodium species are also endemic in Tanzania. David Clyde, who served as the director of the Malaria Service of the East African Malaria Institute at Amani, described the occurrence of four human malaria species, including P. falciparum, Plasmodium vivax, Plasmodium ovale spp. and Plasmodium malariae in his 1967 book “Malaria in Tanzania” [2]. Plasmodium vivax was attributed to importation by Indian immigrants during the first world war and since 1917 this influx has virtually ceased. Plasmodium malariae was observed in 10–20% of malaria infections, mainly as co-infections with P. falciparum and during childhood [2]. More recently, a microscopy-based cross-sectional survey conducted in the Tanga region of coastal Tanzania found very few infections with P. malariae (0.3%) or P. ovale spp. (0.1%) [3]. Data collected in coastal Tanzania, confirm these low numbers of non-P. falciparum Plasmodium infections. Diagnosis by qPCR revealed low prevalence for P. malariae (0.7–5.8%) and P. ovale spp. (0.9–1.1%) among asymptomatic school children (Schindler et al., unpublished data). Since microscopic diagnosis of P. malariae asexual blood stage parasites is hampered by the low parasitaemia and morphological similarities to P. falciparum, molecular based, highly sensitive diagnostic methods are needed to establish the true prevalence of this parasite in the population [4]. Lack of sensitive P. malariae diagnosis methods applicable in the field and the research focus on P. falciparum has resulted in significant knowledge gaps regarding spectrum of potential clinical manifestations and burden of P. malariae infections [5].

It is well established that P. malariae is widespread throughout sub-Saharan Africa, South East Asia and Latin America and the biology of P. malariae was reviewed by Collins et al. [6]. Treatment of syphilis by controlled infections with P. malariae provided valuable insight into human-parasite interactions. The red blood cell cycle lasts 72 h with an average of 8 merozoites released per schizont and the parasite prefers to infect and develop in older erythrocytes. So far, no evidence for a dormant liver stage as described in P. vivax and P. ovale spp. has been observed. Faster acquisition of immunity against P. malariae compared to immune responses against P. falciparum has been described [6].

Clinical episodes of P. malariae infections are characterized by a mild illness caused by low numbers of parasites which can persist for extremely long periods, often for years or even decades [6]. There are reports of cases of P. malariae caused illness from Greece [7] and Trinidad and Tobago [8] decades after eradication of malaria from these regions. Chronic P. malariae infections have been considered a major cause of the nephrotic syndrome in the past, although the incidence of P. malaria-associated nephrotic syndrome has been dramatically reduced in recent decades [7,8,9]. Recently, it was demonstrated that the controlled infection of two volunteers with cryopreserved P. malariae-infected erythrocytes was well tolerated and no severe or serious adverse effect, or biochemical abnormalities were observed [10].

The clinical research facility of the Ifakara Health Institute in Bagamoyo, Tanzania, conducts clinical trials evaluating efficacy of experimental malaria vaccines in the target population [11,12,13]. A controlled human malaria infection (CHMI) model has been successfully established since 2012 [14]. As part of these clinical trials, participants are closely monitored to identify any abnormal clinical or laboratory parameters in order to evaluate vaccine safety and tolerability. Regularly, volunteers are screened for Plasmodium spp. parasites in blood using thick blood smear microscopy as well as quantitative polymerase chain reaction (qPCR). The volunteers described in this report participated in a study evaluating the safety and efficacy of immunization with Sanaria® PfSPZ Vaccine composed of radiation attenuated, aseptic, purified, cryopreserved P. falciparum sporozoites (PfSPZ) [11, 15,16,17,18,19] which was conducted between 2015 and 2016 ( NCT02613520) [20]. The clinical cases of two young men infected with asexual blood stage P. malariae as diagnosed by qPCR are described. These volunteers were followed closely for 4 months during the clinical trial.

Case presentation

Two male residents of Bagamoyo, 20 and 22 years of age, were enrolled into the clinical trial based on predefined exclusion and inclusion criteria as outlined in the clinical trial protocol. A review of the medical history, physical examination, vital signs (pulse, blood pressure, and respiratory rate), and ECG did not reveal any abnormalities. At screening, the volunteers had negative serologies for human immunodeficiency virus (HIV), hepatitis B virus (HBV), and hepatitis C virus (HCV). A single stool sample collected at study enrolment was negative for intestinal helminths and no Schistosoma haematobium eggs were detected in urine. No blood biochemistry abnormalities were detected, which included alanine aminotransferase (ALT), aspartate aminotransferase (AST), total bilirubin (BIL), and creatinine (CRE). The urine analysis using a 13-parameter dipstick (Combina 13 test strips, HUMAN Diagnostics, Germany) was negative at enrolment. A complete blood count (CBC) was conducted at screening and showed normal haematological parameters for volunteer 1, while volunteer 2 had elevated eosinophil counts (1.19 × 103/µL compared to the pre-defined upper normal range of 0.78 × 103 cells/µL). During the 16 weeks of immunization (3 doses of PfSPZ Vaccine at 8-week intervals), the volunteers’ health status was closely monitored. Every 8 weeks at pre-defined visits blood was drawn and any deviations from reference laboratory values were reported. Vital signs, body temperature and biochemistry remained within normal ranges when assessed four times during the follow up period. Haematological parameters which were transiently outside normal ranges in both volunteers were regarded as not clinically significant (Tables 1, 2). Noteworthy, for volunteer 2 the eosinophil counts remained consistently elevated until the end of the study (Fig. 1). Both volunteers tested once positive for low grade proteinuria, during the study by urine dipstick (Tables 1, 2).

Table 1 Overview of clinical and parasitological parameters assessed for volunteer 1
Table 2 Overview of clinical and parasitological parameters assessed for volunteer 2
Fig. 1

Elevated eosinophil counts for volunteer 2 over a time period of more than 400 days. Eosinophil counts of volunteer 2 covering all visits, from study enrolment to completion, are shown. The dashed line represents the upper limit of the normal range (0.78 × 103 cells/µL)

After concluding three PfSPZ Vaccine immunizations, and before vaccine efficacy was assessed by CHMI, the study protocol required screening of whole blood by qPCR to detect sub-microscopic malaria parasitaemia, so that these volunteers could be treated accordingly before participation in CHMI. During this routine visit, qPCR was conducted with fresh blood samples and it was discovered that two volunteers were infected with Plasmodium spp. parasites [21]. Based on P. malariae species-specific qPCR [22] and conventional nested PCR [23], P. malariae infections were confirmed. The presence of P. falciparum [24, 25], P. ovale spp. [26], and P. vivax [25] was excluded by qPCR and conventional PCR [23].

Treatment with 3 doses of artesunate/amodiaquine (200/540 mg) daily for 3 days was initiated, and complete parasite clearance was confirmed by qPCR 4 days later. Both volunteers then underwent CHMI and remained in the clinical trial until study completion. Within the following 296 days until the completion of the clinical trial, no recurrent (recrudescence or new infection) P. malariae parasitaemia was observed. Both volunteers were negative for P. falciparum after the first CHMI, and both became positive for P. falciparum after a second CHMI at 40 weeks after the last immunization and were successfully treated with artemether/lumefantrine.

Blood samples collected during the clinical trial and stored frozen were analysed retrospectively by qPCR to determine the time point of P. malariae infection. It turned out that both volunteers had P. malariae parasitaemia at enrolment into the clinical trial. Both volunteers remained positive throughout the vaccination period. Plasmodium malariae parasites were detectable at four out of four clinical visits, namely at day 0, 53, 113 and 128 of study and malaria treatment took place 132 days after the first detection of the P. malariae infections (Fig. 2). Evaluation of four blood samples collected at the same days by thick blood smear microscopy and conducted by an experienced microscopist was reported as negative. Thick blood smear preparation and reading was performed according to our standard operating procedure followed during CHMI studies [14]. The negative microscopy results and the high Cq values (median of 34.1 with a range of 31.6–37.7) obtained by the Plasmodium spp. qPCR assay indicate that the parasitaemia levels were low. When compared to qPCR based detection of P. falciparum 18S gene, these Cq values would correspond to a parasitaemia between 1 and 10 P. malariae parasites per µL blood [27].

Fig. 2

qPCR data for the Plasmodium spp. screening and Plasmodium species identification assays. The upper panel shows the amplification curves for the Plasmodium spp. target of the screening assay. The lower panel shows the amplification for the four Plasmodium species-specific targets. All samples were run in triplicates and DNA from P. falciparum, P. malariae, P. ovale wallikeri, P. ovale curtisi and P. vivax were included as positive controls during the qPCR

Discussion and conclusion

The two P. malariae cases presented here confirm the ability of this Plasmodium species to persist at low density in the human host for extended time periods without causing clinical symptoms or signs. Both were detected in clinically healthy, young men participating in a clinical trial of PfSPZ Vaccine. No abnormalities in vital signs, alanine aminotransferase, aspartate aminotransferase, total bilirubin, and creatinine serum levels were detected. Except for a one-time low-level proteinuria, urine analysis parameters measured by dipstick remained within physiological ranges and there was no indication of impaired renal function in these two volunteers. Volunteer 2 did have mildly elevated eosinophil counts throughout the entire course of the clinical trial. These levels were not affected by the treatment of the P. malariae infection and may have reflected an ongoing intestinal helminth infection that was too low to be detected by a single stool examination. All other haematological abnormalities were of temporary nature and considered to be not clinically significant. Interestingly, the P. malariae parasitaemia levels were not affected by the three rounds of PfSPZ Vaccine immunizations. This might be due the mode-of-action of the vaccine which is thought to act against the liver-stage of the parasite.

The data presented in this report demonstrates that study sites in malaria endemic regions conducting clinical trials should develop on site malaria diagnostic infrastructure, which includes the detection of low-density asexual blood stage parasitaemia and identification of different Plasmodium species. Eventually, if the goal of malaria elimination is pursued vigorously, the implementation of highly sensitive diagnostic methods to detect asymptomatic, low-density P. malariae infections need to be included into the malaria elimination agenda.



P. falciparum sporozoites


controlled human malaria infections


human immunodeficiency virus


hepatitis B virus


hepatitis C virus


alanine aminotransferase


aspartate aminotransferase


total bilirubin




complete blood count


red blood cells






mean corpuscular volume


mean corpuscular haemoglobin


mean corpuscular haemoglobin concentration




white blood cells








red cell distribution width


thick blood smear


quantitative polymerase chain reaction


quantification cycles of qPCR reaction


Plasmodium species identification qPCR assay


no abnormalities detected


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Authors’ contributions

SJ, MT, SLH, SA and CD designed the study. TS, MM, GM, SM and JS conducted the laboratory analysis. SJ, FS, KR, LWPC and TLR collected and analysed the clinical data. TS, SJ, SLH, LWPC, TLR and CD interpreted the findings and wrote the manuscript. All authors read and approved the final manuscript.


The authors would like to thank the study volunteers for their participation in the study. We would also like to thank Paul Lansdell, PHE Malaria Reference Laboratory and Don van Schalkwyk, London School of Hygiene and Tropical Medicine who kindly provided the DNA controls for the different Plasmodium species.

Competing interests

LWP Church, TL Richie and SL Hoffman are salaried, full time employees of Sanaria Inc, the developer and sponsor of Sanaria® PfSPZ Vaccine. These individuals were not responsible for the collection, recording or entry of the clinical and parasitological data presented here. The other authors have no relevant affiliations or financial involvement with any organization or entity with a financial interest in the subject matter or materials discussed in the manuscript.

Availability of data and materials

The datasets supporting the conclusions of this article are included within the article.

Consent for publication

Written informed consent was granted from the patients for publication of clinical and laboratory data obtained during the clinical trial on condition of anonymity.

Ethics approval and consent to participate

The two volunteers described in this case report consented to participate in a clinical study, registered at Clinical (NCT02613520), and conducted under a U.S. FDA IND application. The study was performed in accordance with Good Clinical Practices. All data presented in this case report were obtained according to the approved study protocol. The protocol was approved by the institutional review boards of the Ifakara Health Institute (Ref. No. IHI/IRB/129 No: 32-2015), and the National Institute for Medical Research Tanzania (NIMR/HQ/R.8a/Vol.IX/2049), by the Ethikkommission Nordwest- und Zentralschweiz, Basel, Switzerland (reference number 15/104), and by the Tanzania Food and Drug Authority (Auth. No. TZ15CT013).


This study was funded by the public–private partnership, the Equatorial Guinea Malaria Vaccine Initiative (EGMVI), supported by the Government of Equatorial Guinea – Ministry of Mines and Energy and Ministry of Health and Social Welfare, Marathon EG Production Limited, Noble Energy and Atlantic Methanol Production Company.

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Correspondence to Tobias Schindler or Said Jongo.

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Schindler, T., Jongo, S., Studer, F. et al. Two cases of long-lasting, sub-microscopic Plasmodium malariae infections in adults from coastal Tanzania. Malar J 18, 149 (2019).

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  • Plasmodium malariae
  • Asymptomatic malaria
  • Quantitative polymerase chain reaction (qPCR)