- Open Access
Culturable bacteria associated with Anopheles darlingi and their paratransgenesis potential
Malaria Journal volume 20, Article number: 40 (2021)
Malaria remains a major public health problem in South America, mostly in the Amazon region. Among newly proposed ways of controlling malaria transmission to humans, paratransgenesis is a promising alternative. Paratransgenesis aims to inhibit the development of parasites within the vector through the action of genetically modified bacteria. The first step towards successful paratransgenesis in the Amazon is the identification of Anopheles darlingi symbiotic bacteria, which are transmitted vertically among mosquitoes, and are not pathogenic to humans.
Culturable bacteria associated with An. darlingi and their breeding sites were isolated by conventional microbiological techniques. Isolated strains were transformed with a GFP expressing plasmid, pSPT-1-GFP, and reintroduced in mosquitoes by feeding. Their survival and persistence in the next generation was assessed by the isolation of fluorescent bacteria from eggs, larvae, pupae and adult homogenates.
A total of 179 bacterial strains were isolated from samples from two locations, Coari and Manaus. The predominant genera identified in this study were Acinetobacter, Enterobacter, Klebsiella, Serratia, Bacillus, Elizabethkingia, Stenotrophomonas and Pantoea. Two isolated strains, Serratia-Adu40 and Pantoea-Ovo3, were successfully transformed with the pSPT-1-GFP plasmid and expressed GFP. The fluorescent bacteria fed to adult females were transferred to their eggs, which persisted in larvae and throughout metamorphosis, and were detected in adult mosquitoes of the next generation.
Serratia-Adu40 and Pantoea-Ovo3 are promising candidates for paratransgenesis in An. darlingi. Further research is needed to determine if these bacteria are vertically transferred in nature.
Malaria remains a major public health problem worldwide, with more than 200 million cases and nearly half a million deaths annually. Prompt diagnosis and treatment, preventive therapy and vector control are tools presently available to prevent malaria disease and death . Despite substantial progress toward malaria control and elimination in the Americas, malaria has seen a resurgence in the last years due to political unrest, worsening social and economic crisis and large-scale migration .
Anopheles darlingi is a major malaria vector in South America [1, 3, 4] and, therefore, a major target of vector control. Its importance as a malaria vector spurred studies of An. darlingi biology [5,6,7], behaviour [8, 9], physiology and biochemistry , genetics [11,12,13], and insecticide resistance [14, 15]. Because An. darlingi is anthropophilic, opportunistic, exophagic, and exophilic, long-lasting insecticidal nets and indoor residual spraying are not effective alone and novel vector control methods are needed to improve the control of malaria transmission by these mosquitoes [16,17,18]. For example, strategies deploying genetically-modified mosquitoes [19, 20] and their endosymbionts (paratransgenesis) [21,22,23,24] have been proposed as vector-based tools for malaria control.
Paratransgenesis entails the colonization of mosquito gut with genetically engineered bacteria that are effective in inhibiting parasite development. Huang et al.  proposed that ideal endosymbionts for effective paratransgenesis application are easily manipulated genetically, colonize mosquitoes efficiently, spreading into mosquito populations (vertical and horizontal transmission), and are efficient in inhibiting pathogen development in mosquitoes. Proof-of-principle experiments such as those conducted by Yoshida et al.  and Wang et al. [26, 27] demonstrated that genetically modified bacteria are capable of interfering or blocking malaria parasite development in mosquitoes. Among the symbiotic bacteria found in malaria vectors, species belonging to the genera Asaia, Pantoea, Serratia, Pseudomonas and Thorsellia have been evaluated as candidates for paratransgenesis [28,29,30].
The microbial flora associated with An. darlingi has been investigated [31,32,33,34,35,36]. Here, in order to move forward toward paratransgenesis, symbiotic bacterial strains that are amenable to genetic manipulation, able to colonize An. darlingi, and are transferred from adult females to their progeny were identified.
Field collection of Anopheles darlingi
Adults, pupae, and larvae of An. darlingi and water from their breeding sites were collected in Coari and Manaus (Table 1, Fig. 1). These are areas of active malaria transmission, as determined by the Vigilância Epidemiológica da Secretaria Municipal de Saúde de Manaus (Epidemiological Surveillance of the Municipal Health Secretariat in Manaus). Mosquito collections were performed in a single site in each location, for three hours during dusk.
Surface microlayer (SML) water samples were collected using a stainless-steel mesh screen measuring 400 cm2, with a mesh size of 1.25 × 0.36 mm wire diameter as described previously . Water samples were transferred to sterile 50 ml tubes and stored on ice.
Mosquito larvae and pupae were collected with a 350 ml aluminum dipper, using standard dipping techniques . Larvae and pupae were transferred to sterile plastic containers containing sterile water and stored on ice. Adult mosquitoes were collected during dusk in peri-domicile and extra-domicile environments. Adult females were captured by human landing catches (HLC), by trained technicians using personal protective equipment. Only non-blood fed females were selected for this study. Captured mosquitoes were transferred to 300 ml wax-coated paper cups and transported to the laboratory. Water, larvae, pupae and adult mosquito samples were transported to the laboratory and processed within 24 h. No mosquito mortality occurred during transportation. Species were identified using morphological characters .
Mosquito husbandry was at 29 °C, 80% relative humidity and 12/12 light/dark cycles. Larvae were fed autoclaved fish food (Tetramin). Adults were given access to 10% sucrose solution ad libitum and fed on chicken blood when required for the experiments described below. All the protocols used in these studies received ethical clearance from the Brazilian National Institute for Amazonian Research (INPA) Ethics Committee and the biological material analyzed during the present study was collected with official collecting permission (17524-1 and 21264-5) given by ‘Sistema de Autorização e Informação em Biodiversidade’ (SISBIO) of the Brazilian Ministry of Environment (MMA).
Bacteria isolation and morphological characterization
Ten larvae, ten pupae and ten adults from each collection site were selected for bacterial isolation. Breeding water samples were plated directly from the transportation tubes, 50 µl per Petri dish. Anopheles darlingi larvae (3rd and 4th instar), pupae, adult females and pools of 10 eggs were sequentially immersed five times, for a few seconds each time, in 70% ethanol and then deionized, autoclaved sterile water before being homogenized. Each larva, pupa, adult or eggs pool were individually homogenized in 1 ml sterile water and centrifuged for 3 min at 8,000 rpm. The pellet was resuspended in 200 µl of sterile water by vortexing and centrifuged again for 1 min at 800 rpm. From the supernatant, 50 µl were plated in each Petri dish and spread with a Drigalski spatula. Bacteria extracted from all samples were plated on 90 mm Petri dishes containing Tryptic Soy Agar (TSA), Nutrient Agar (NA) or Luria–Bertani Agar (LB) medium. Fluconazole (20 mg/ml) was added to inhibit fungal growth.
Cultures were incubated at 29 °C for 24 h. Negative control plates with only sterile water resulted in no colonies. The streak plate technique was applied for isolating specific bacteria from the original colonies potentially containing a mixture of microorganisms.
Colony morphology was inspected for size, shape, texture, elevation, and color. Additionally, cell type and Gram staining were examined for each isolate using standard microbiological techniques and a magnification microscope. Each isolate was preserved in 2 ml cryotubes containing Nutrient Broth, 20% glycerol at − 80 °C. Colonies displaying similar morphological and staining characteristics were assigned to groups and three representatives from each group were randomly selected for 16S rRNA gene sequencing.
DNA extraction, 16S rRNA gene amplification by PCR and sequence analyses
DNA extraction, from isolated bacterial colonies, was performed with InstaGene™ Matrix (BioRad) following the manufacturer’s instructions. DNA was spectrophotometrically quantified and adjusted to 150 nanograms/µl. Bacterial 16S rRNA genes were amplified by PCR using Taq Pol—Master mix 2× (Cellco Biotec), and the primers 27F (5′-AGAGTTTGATCMTGGCTCAG-3′)  and 1100R (5′-AGGGTTGCGCTCGTT-3′) modified from Sawada et al.  used in a previous study . Each reaction consisted of 12.5 µl Master mix; 1 µl DNA (150 ng/µl); 10.5 µl H2O milli-Q and 0.5 µl (10 pMol) of each primer. The PCR program had an initial denaturation at 95 °C for 3 min, followed by 35 cycles of [94 °C for 1 min, 54 °C for 40 s, 72 °C for 90 s], followed by a final extension at 72 °C for 5 min. Amplicon production and size were verified by electrophoresis in a 0.8% agarose gel, stained with ethidium bromide. Amplicons were purified with PCR Purification Kit (Cellco Biotec), following the manufacturer’s instructions and 200 ng of purified DNA was used for each sequencing reaction (BigDye Terminator V 3.1., Life Technologies and 10 pMol of primer). 27F and 1100R primers were used in separate sequencing reactions, generating data from both DNA strands.
Sequences were assembled using CAP3 program with the capability to clip 5′ and 3′ low-quality regions of reads, apply quality values in overlaps between reads, and generate consensus sequences . Taxonomic assignments of the isolated bacteria were based on comparisons of the consensus sequence with 16S sequences in GenBank applying BLASTn (https://blast.ncbi.nlm.nih.gov/Blast.cgi) at the National Center for Biotechnology Information (NCBI) and the Ribosomal Database Project, RDP-II (http://rdp.cme.msu.edu/comparison/comp.jsp).
Bacterial strains isolated in this study were grown in Nutrient broth. Electrocompetent cells were then prepared as described by Gonzales et al.  and transformed with the plasmid pSPT-1-GFP using an Electroporator 2510 (Eppendorf®). The plasmid pSPT-1-GFP (Additional file 1: Document S1) was kindly provided by Dr. Spartaco Astolfi Filho (CAM-UFAM). Following electroporation, bacteria were plated on Nutrient Agar containing 100 mg/ml ampicillin and incubated for 16 h at 37 ºC. Colonies expressing green fluorescent protein were identified by exposure to UV light, and were selected for further studies.
All experiments were conducted in three biological replicates. Wild An. darlingi females were captured in Manaus, Raifram (Table 1) and transferred to the laboratory and kept without access to food and water for 12 h. In each replica, 50 females were separated in three plastic cups (20, 20 and 10). The cup containing 10 mosquitoes (Control) was fed with cotton balls soaked in 10% sucrose for 6 h. Sterile cotton balls soaked in 10% sucrose containing 100 mg/ml ampicillin and ~ 3 × 104 CFU/ml of GFP expressing bacteria (Serratia-Adu40 or Pantoea-Ovo3) were placed on the top of the mosquito cages containing 20 mosquitoes for 6 h. Then, adult females were fed on chicken blood for 1 h and kept in the insectary until oviposition. Eggs were collected on moist sterile filter paper containing 100 mg/ml ampicillin.
The exterior of ten eggs from each female was surface-rinsed with 70% ethanol for 1 min, then washed for 1 min in sterile distilled water. Surface-rinsed eggs were immediately homogenized and plated on Nutrient Agar plates with 100 mg/ml ampicillin. After oviposition, females were treated with 70% ethanol and sterile water, as described for the eggs. Their whole bodies were homogenized and plated on Nutrient Agar plates with 100 mg/ml ampicillin. The remaining eggs were treated similarly for surface-rinsing with 70% ethanol and transferred to plastic containers filled with sterile deionized water containing 100 mg/ml ampicillin and food for development of the F1 generation. The containers were sterilized daily, water was discarded and replaced with fresh sterile water containing 100 mg/ml ampicillin and food. Ten larvae from each developmental instar (1st, 2nd, 3rd and 4th), 10 pupae and 10 three-day-old, sugar fed adults emerging from each family were rinsed with 70% ethanol and sterile water, as described above. Their whole bodies were homogenized and plated on Nutrient Agar plates with 100 mg/ml ampicillin. Bacterial colonies displaying GFP expression were identified by exposure to UV light after incubation for 16 h at 37 ºC.
One set of experiments similar to that described above, but omitting ampicillin during the development of F1 mosquitoes, was performed to evaluate the effect of the antibiotic on the survival and persistence of GFP positive bacteria in An. darlingi.
Bacteria isolation and species identification
A total of 900 bacterial colonies were included in this study, which were organized in 126 groups of morphologically similar colonies. Bacteria were isolated from An. darlingi samples collected in two municipalities, Manaus and Coari, including larvae, pupae, adult females, their breeding site water and An. darlingi eggs. There was no apparent difference in the number of colonies formed when plating breeding water and mosquito extracts in three growing media (TSA, NA and LB), therefore, Nutrient agar and Nutrient broth were used to isolate pure cultures and establish stable frozen stocks. Three representative isolates from 84 randomly selected groups were further characterized by 16S rRNA gene PCR amplification and sequencing, resulting in 179 high quality sequences (Table 2).
Blastn with the 179 high-quality 16S rRNA sequences revealed 35 genera of bacteria (Table 3). All sequences were registered in SisGen database (Sistema Nacional de Gestão do Patrimônio Genético e do Conhecimento Tradicional Associado) with the number A0F653E and are available in GenBank with accession numbers MT052372-MT052395 and MN709221-MN709375 (Additional file 1: Tables S1–S5).
Five genera from Proteobacteria (Achromobacter; Acinetobacter; Klebsiella; Serratia; and Siccibacter) and one Firmicutes genus (Bacillus) were identified in samples from Coari. Serratia and Bacillus were the most common (Additional file 1: Table S1). Samples from Manaus included representatives of Proteobacteria; Firmicutes; Actinobacteria; and Bacteroidetes, distributed in 34 genera. The predominant genera were Bacillus, Acinetobacter, Pseudomonas and Chryseobacterium. Proteobacteria with the largest representation were Acinetobacter, Enterobacter, Klebsiella, Serratia, Pantoea, Stenotrophomonas, and Klebsiella variicola (Additional file 1: Table 2). Firmicutes species were also detected with Bacillus being the most abundant (Additional file 1: Table S3). Three genera of Bacteroidetes were detected with Elizabethkingia (4 strains) being the most abundant (Additional file 1: Table S4). Among four genera of Actinobacteria, Microbacterium and Leucobacter had three and two representative strains, respectively (Additional file 1: Table S5).
Bacterial transformation for paratransgenesis
Considering the frequency (number of isolated strains) and persistency (findings throughout development) of the identified bacterial strains observed in this study, as well as previous publications on mosquito paratransgenesis, the strains Serratia-Adu40, Enterobacter-Adu24, Pantoea-Adu38, and Pantoea-Ovo3, were selected for further investigation. Serratia and Enterobacter were detected in all developmental stages of An. darlingi as well as in the water of their breeding sites (Table 2). Pantoea species have been successfully applied for paratransgenesis studies in other mosquito species [23, 26]. Those four strains were submitted to electroporation with the plasmid pSPT-1-GFP; however, only Serratia-Adu40 and Pantoea-Ovo3 were amenable for transformation, as evidenced by producing green fluorescent colonies. To examine recombinant bacteria colonization and survival in the mosquito, female mosquitoes were fed GFP-expressing Serratia and Pantoea and their progeny examined for green fluorescent bacteria. Eggs, larvae, pupae and the next generation of adults were homogenized, and homogenates were plated on selective ampicillin-containing NA medium. For both mosquito groups fed GFP-Serratia and GFP-Pantoea, GFP-expressing bacteria were present in all individuals and developmental stages examined (Fig. 2). Similar results were obtained when F1 mosquitoes were maintained in the presence or absence of ampicillin. The 16S rRNA genes of GFP-expressing bacteria isolated from F1 mosquitoes (GenBank accession numbers MT102128 Serratia-Sm1 and MT102127 Pantoea-Pa1) are identical to those of the original Serratia-Adu40 and Pantoea-Ovo3 strains, indicating there was no horizontal transfer of the plasmid to other bacteria.
Identification of bacteria associated with vector mosquitoes has received particular attention since studies suggest that the vector gut microbiota affects the outcome of mosquito infection with Plasmodium parasites [44,45,46]. Additionally, paratransgenesis has been proposed as an alternative and supplemental approach for controlling malaria transmission by mosquitoes . Paratransgenesis is based on the use of symbiotic bacteria to express anti-pathogen effector molecules inside the target vector species. For this approach, symbiotic bacteria are isolated, genetically modified to express anti-Plasmodium effector molecules, and then reintroduced into the mosquito, where they produce the desired effect [25, 26]. Therefore, ideal candidates for paratransgenesis are those easily manipulated genetically, which colonize mosquitoes efficiently, spreading into mosquito populations and are efficient in inhibiting pathogen development in mosquitoes .
Although studies have been carried out to identify the bacterial microbiota of malaria vector mosquitoes [30, 47,48,49,50,51,52], several important vector species remain un-studied or with limited information. Among those is An. darlingi, and other malaria vectors in the American continent. Here, the repertoire of culturable bacteria associated with An. darlingi was expanded and investigated for the potential for paratransgenesis. The predominant bacteria genera found associated with An. darlingi in this study, in decrescent number of isolated strains, were Bacillus, Acinetobacter, Chromobacterium, Klebsiella, Serratia, and Enterobacter. Other bacteria not amenable for isolation under our protocol likely complement the set of An. darlingi associated microorganisms. Some of those may be candidates for paratransgenesis in this mosquito species. For example, Asaia sp. was found associated with by Oliveira et al.  after amplification and sequencing of the V4 hypervariable region of the 16S rRNA. The ability of Asaia to colonize different species of malaria vectors and its demonstrated vertical and trans-stadial diffusion mechanisms have indicated its potential in paratransgenesis .
Colonies of Acinetobacter, Bacillus, Enterobacter, Klebsiella, Pantoea and Serratia were identified in samples extracted from all developmental stages of the mosquito and in their breeding sites, indicative of a strong association between these bacteria and An. darlingi. Acinetobacter and Klebsiella contain species which are potentially pathogenic [53, 54].
Pantoea agglomerans has been found in association with anopheline mosquitoes [31, 55]. Furthermore, Wang et al.  engineered P. agglomerans to secrete anti-malarial proteins in the mosquito midgut. Mosquitoes carrying these modified bacteria had a significant reduced infection prevalence and showed up to 98% inhibition of oocyst formation in mosquitoes fed an infectious meal.
Genetic transformation of four strains, Serratia-Adu40, Enterobacter-Adu24, Pantoea-Adu38, and Pantoea-Ovo3, was attempted with a plasmid that induces the expression of GFP, for the purpose of tracking bacteria transfer among mosquito developmental stages. However, successful identification of green fluorescent bacterial colonies was only achieved with Serratia-Adu40 and Pantoea-Ovo3. Additional effort for the transformation of mosquito-associated bacteria may include the optimization of methods for preparing transformation competent cells and the inclusion of other plasmids carrying different origins of replication and/or marker genes.
Mosquitoes were fed sugar meals containing either Serratia-GFP or Pantoea-GFP to examine recombinant bacteria colonization and survival in An. darlingi mosquitoes. Midguts of female mosquitoes that were fed GFP-tagged bacteria became strongly fluorescent, indicating that they were established and multiplying. Transstadial transfer of bacteria in An. darlingi was also investigated. Under the experimental conditions applied in this study, Serratia-GFP or Pantoea-GFP were transferred from gravid females to their eggs, persisted in the hatched larvae throughout all four instars, and remained for the duration of metamorphosis, to be detected in adults of the next generation. It is not clear how viable bacteria remained in eggs after surface-rinsing with 70% ethanol, since it has been demonstrated that vertical transmission occurs mostly by egg-smearing . Possible contamination of eggs and other specimens following ethanol sterilization has been demonstrated previously and alternative methods of sterilization should be considered in future work [57, 58]. A significant number of bacteria was observed in pupae (Fig. 2), a surprising observation since an effective gut sterilization mechanism operating during mosquito metamorphosis has been reported . Further investigation is needed to clarify these findings; however, whatever route of transmission occurred, vertical transmission was observed in this study.
Taken together, the results reported here indicate that it is possible to introduce genetically transformed bacteria in An. darlingi females by a sugar meal, that the bacteria may survive, multiply and express a GFP marker (eventually an anti-Plasmodium effector molecule), and that Serratia-Adu40 and Pantoea-Ovo3 are transferred from adult females to their eggs, from eggs to larvae and finally to adults in the next generation. Vertical transmission of Serratia sp. in Anopheles and Pantoea sp. in Culex mosquitoes has been demonstrated previously [60, 61].
Additional research is needed to determine if these bacteria are also vertically transferred in nature. Furthermore, careful studies need to be performed certifying that these isolated strains do not carry virulent genes causing pathologic conditions in humans, animals or plants.
While paratransgenesis technical tools may be available, implementing an effective and scalable paratransgenesis-based malaria control strategy is still in the conceptual stage. Issues related to efficacy and biosafety need to be addressed and a regulatory framework for this specific application needs to be established. However, inaction should not be the option. The potential public health benefit of new tools to reduce or even eradicate malaria is clear and widely recognized. The risks incurred by testing new, and unproven strategies and the risks to human health and the environment posed by maintaining the status quo should be taken into account in decision-making.
Availability of data and materials
All data generated or analysed during this study are included in this published article and its supplementary information files. DNA sequences are available at National Center for Biotechnology Information http://www.ncbi.nlm.nih.gov.
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We thank the Graduate Program in Biotechnology—PPGBIOTEC / UFAM and the National Institute for Research in the Amazon—INPA. We thank Enedina Nogueira de Assunção, Paulo Abraão Cavalcante Maranhão, Leissandra Nascimento Castelo, Kerollen Runa Pinto, Júlio Nino de Souza Neto, Diego da Silva Moreira and Simone Cardoso Soares for the general support in the laboratory, as well as Rejane de Castro Simões and Francisco Augusto da Silva Ferreira for their help in collecting and the maintenance of mosquitoes included in this study. Jayme A. Souza-Neto was a São Paulo Research Foundation (FAPESP) Young Investigator (Grant Number 2013/11343-6)
Open Access funding provided by Uppsala University. Open Access funding provided by Uppsala University. This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—Brasil (CAPES)—Finance Code 001, by the Swedish Research Council (Grant Number 348–2012-622), by the project Pró-Amazônia: Biodiversidade e Sustentabilidade (process number 23038.009442/2013–12) and by the Programa de Apoio à Fixação de Doutores no Amazonas—FIXAM/FAPEAM (Process Number 062.02805/2015).
Ethics approval and consent to participate
The Sistema de Autorização e Informação em Biodiversidade—SISBIO, authorized the collection of mosquitoes (immature and adult) (Number 17524–1) and the maintenance of mosquitoes in laboratory in accordance with ethical standards (Number 21264–5). All sequences were registered in SisGen database, Brazil (Sistema Nacional de Gestão do Patrimônio Genético e do Conhecimento Tradicional Associado) with the number A0F653E.
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Bacteria isolated from samples from Coari. Table S2. Proteobacteria isolated from samples from Manaus. Table S3. Firmicutes isolated from samples from Manaus. Table S4. Bacteroidetes isolated from samples from Manaus. Table S5. Actinobacteria isolated from samples from Manaus.
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Rocha, E.M., Marinotti, O., Serrão, D.M. et al. Culturable bacteria associated with Anopheles darlingi and their paratransgenesis potential. Malar J 20, 40 (2021). https://doi.org/10.1186/s12936-020-03574-1
- Vector-borne disease
- Amazon forest